1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTAATCCCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctgtcgaattcctttctttcacgtttgatgtaaacttgttttggttttttag
species | Selaginella moellendorffii |
transcript | EFJ04915 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCCATACACACCAGCTGAAGCTATGTGACTTCGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCGEST: gi|169034065|gb|FE442799.1|FE442799
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
EST: CCCATACACACCAGCTGAAGCTATGTGACTTCGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCGEST: gi|169066575|gb|FE474135.1|FE474135
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
EST: CCCATACACACCAGCTGAAGCTATGTGACTTCGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCGEST: gi|169038251|gb|FE443937.1|FE443937
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
EST: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCGEST: gi|169033900|gb|FE441932.1|FE441932
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
EST: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCGEST: gi|169100546|gb|FE502721.1|FE502721
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
EST: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTG GTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
genomic: CCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctg ... ggttttttagGTGAAAGGGGAACCGAACATCTCTTACATATGTTCCAGATACTACCGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAATCCCCATACACACCAGCTGAAGCTATGTGATTTTGGCAGCGCCAAAGTGCTGgtgagtgctgtcgaattcctttctttcacgtttgatgtaaacttgttttggttttttag
- - - - - - - - - CAGCTG
- - - - - - - - - AGCTGA
- - - - - - - - - - CTGAAG
- - - - - - - - - - - TGAAGC