Sequence
atgc intronic sequence ATGC exonic sequenceGCTTACGAGAAGAAAGCAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAGgtaggcaggtttgcatttgttttggattgcaagagcttcacctccgttggcag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ04865 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ04865 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA03G02930.1 (Glycine max), 5'ss of exon 6
GCTTACGAGAAGAAAGCAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAGgt-aggcaggtttgcatttgttttggattgcaagagcttcacctccgttggcag------------------------------------------------
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GCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGgttatattgactgacttttattttt--ttacgtcactttctttttagattattttttggttgagtttcatgctgactacataaaaattctttgacaaacggt
upper sequence: EFJ04865 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA01G34270.1 (Glycine max), 5'ss of exon 6
GCTTACGAGAAGAAAGCAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAGgtag-----gcaggtttgcatttgttttggattgcaagagcttcacctccgttggcag------------------------------------------
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GCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGgttatactcactgacttttattgtttttacgtcactttctttttaaatgttcttttatgtttgagtttcatgctgactacataaaagttctttgataaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169043942|gb|FE454362.1|FE454362EST: CAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAG GTTTTTGGCACAAAGAAATTGTTTTGGTTCCTTCCCATGTATGCGGAAGAG
genomic: CAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAGgtaggcaggt ... ccgttggcagGTTTTTGGCACAAAGAAATTGTTTTGGTTCCTTCCCATGTATGCGGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTACGAGAAGAAAGCAACTGCAAGATGGCGCTATGACCTTGGGCGTAGAAAGAATTTCGAGCAGgtaggcaggtttgcatttgttttggattgcaagagcttcacctccgttggcag
- - - - - - - - - - GCAAGA
- - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG