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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGGAGACACAATGCGGTCGCTGTGGAGAATGGGCCAATTGTTTTACGTTCTACTGCGTTGCGCTAGGCTACAATGCTCGTCTGgtaacgccgtggtcatagaatctgttggttcatgcttgtaactcttgcttttgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ38670
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31479 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os07g31460.1 (Oryza sativa), 5'ss of exon 9
CTCATGGAGACACAATGCGGTCGCTGTGGAGAATGGGCCAATTGTTTTACGTTCTACTGCGTTGCGCTAGGCTACAATGCTCGTCTGgtaa----cgccgtggtcatagaatctgttggttcatgct--tgtaactcttgcttttg--tgcag----------------------------------
||  | || ||       || ||||||||||||||||||||||| ||||| ||||||||        | || ||  | ||||||||||| |    |    |  ||||| | |   ||  | ||   |  | ||    |||||| |   || |                                   
CTTCTAGAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttccataatattcataaatttgttttatccacaatgatatacaatttgcttataattgtaagcggctctccattcgtccacttgtcagtatactt