1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGTCGGTTCTTATGGTCGGCGAGTGGGTTATCAAACGTATGCCTCTCGTGAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaacttcgcacgatggattagtttgatttgctttgctaatgttctttcctacag
species | Selaginella moellendorffii |
transcript | EFJ37288 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169107489|gb|FE508332.1|FE508332
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169075454|gb|FE483088.1|FE483088
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169049128|gb|FE457116.1|FE457116
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAATACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169107488|gb|FE508331.1|FE508331
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169068478|gb|FE479029.1|FE479029
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAATACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTGEST: gi|169049129|gb|FE457117.1|FE457117
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
EST: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAG ATCAAAATACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
genomic: GAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaa ... tttcctacagATCAAAACACCCAGGCTTTCAAGGAGGTGGCGATCATACGACACCCTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCGGTTCTTATGGTCGGCGAGTGGGTTATCAAACGTATGCCTCTCGTGAGACACATATACTCGGCGTCCAAGCAAATCAGTGCTGCGATCTCTCCAGgtatgaggaacttcgcacgatggattagtttgatttgctttgctaatgttctttcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC