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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCAACGCCCGAGGgtgagaagtttttatccatcttttcttcccgttaatcttgcgtgatatatgctattgtgttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ36428
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 4
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCAACGCCCGAGGgtgagaagtttttatccatcttttcttcccgttaatcttgcgtgatatatgctattgtgttgtag--------------------------------------
| |||||||| ||||||||||| || || || ||||| |||  ||||||||| || || || |||||||||||||| |||||||| ||||   | || ||||  |    |  ||||  ||  | | |   ||| ||||||  | || | | | |      |  |                                       
AGAGTGAGCGCATGGTCCGCTGTTTATTTGATCTTGCAAGGTTCTATGCTCCAAGTACAATCTTCATTGATGAAATTGACTCCCTCTGCACATCTCGTGGgtatgtgaatgctatctgtccatacat---gttcatcttgtttaatgtctccaaagacaatcaaagttttctcaatactttttagcataatcatgggtgcatt

upper sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G017305_T02 (Zea mays), 5'ss of exon 1
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCA--ACGCCCGAGGgtgagaagtt--tttatccatcttttcttcccgtt---aatcttgcgtgatatatgctattgtgttgtag---------------------------------------------------------------------------------------
| |||||||| |||||||| ||||| || || ||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||   ||| || |  || | ||||  |||  | |  | ||  ||  ||    ||      |  | ||     | | | ||| |                                                                                        
AGAGTGAGCGCATGGTCCGTTGCTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACGTCGCGCGGgtatgtggagttaattttcctagatgttgctcgtgtctacaagtcaatgaaaaattcctcaatattttgcactataagcaagaatgtatcattctgctagacaacagaaaatgtacctatatgtttaatgtatttatccattttctttcttaatatcag

upper sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCA--ACGCCCGAGGgtgagaagtt--tttatccatcttttcttcccgttaatcttgcgtgatatatgctattgtgttgtag-----------------------------------------------------------------------------------------
|||||||||| ||||| || || || || || ||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||   | |  | |  || |||||    ||  | |  | ||| |    |  |      |  |  |     | | | ||| |                                                                                          
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag

upper sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA15G01510.1 (Glycine max), 5'ss of exon 2
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCAACGCCCGAGGgtgaga-agtttttatc---------catcttttcttcccgttaatcttgcgtgatatatgctattgtgtt-gtag----------------------------------------------
| || ||||| |||||||| |||||||| || ||||| || || ||||| || || || ||||||||||||||||| || || || ||||| ||  | |||| ||  | | ||  ||         ||| | | ||||   ||        || ||||  |  ||  | ||  |                                                
AGAGCGAGCGCATGGTCCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGgtaagtcaatcttcttcttcatggggcatgtatgcttcatcttctcaccaagtaatattagggataatttttatcaactgtcacgaaagattgaaccctgattgttgagtttttttcaacag

upper sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S213_118V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCAACGCCCGAGGgtgagaagtttttatccatcttttcttcccgttaatcttgcgtgatatatgctattg----tgttgtag---------------------------------
| |||||||| |||||  |   |||||| || |||||| | ||||| ||||| ||||| || ||||||||||| ||||| || |||||||| ||||| |||| ||    |  ||||  | ||||    |      | |   ||    | ||  | ||    | ||  |                                  
AGAGTGAGCGCATGGTGAGAGTCTTGTTTGATCTTGCCCGTGCCTACGCTCCTAGCACAATATTCATTGATGAGATCGATTCGCTGTGCAATGCCCGTGGgtaagt--ctgatatctgtgttttgcctcgaaaggtttactgttgcctttgggaatgagaatatttcaagtgatgttcacatgtaccatcctgatggttaga