1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAGgtacgtaagctcttgtgtcaagtctaaagtgcttacaaaatcgtccag
species | Selaginella moellendorffii |
transcript | EFJ35129 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAG GTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCATEST: gi|169044747|gb|FE451904.1|FE451904
genomic: ACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAGgtacgtaagc ... aatcgtccagGTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCAT
EST: ACGTAAAAAGTCTAAAGAAGAGATCTTTATGGTCAAAGATTCTCGAGGAG GTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCATEST: gi|169024122|gb|FE435178.1|FE435178
genomic: ACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAGgtacgtaagc ... aatcgtccagGTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCAT
EST: ACGTAAAAAGTCTAAAGAAGAGATCTTTATGGTCAAAGATTCTCGAGGAG GTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCAT
genomic: ACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAGgtacgtaagc ... aatcgtccagGTAATGGAGAAGCTCGTGGACGTTGTTTATTTTCTACACCAACGGATTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACGTAAAAAGTCTAAAGAAGAGATCTTTGTGGTCAAAGATTCTCGAGGAGgtacgtaagctcttgtgtcaagtctaaagtgcttacaaaatcgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG