Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCTACGCGAGCTGAAGACTATAAACCAGATGGTTCCAAATGCTCTAGGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaagaaacgtgtacgaatattccgactaacagcttatgatcag

Basic information

species Selaginella moellendorffii
transcript EFJ34631
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034851|gb|FE444040.1|FE444040
EST:     GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169076791|gb|FE485834.1|FE485834
EST:     GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169024271|gb|FE435223.1|FE435223
EST:     GGATGCTTGCTAAGCTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GACGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATGCGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169115760|gb|FE517346.1|FE517346
EST:     GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169063161|gb|FE471683.1|FE471683
EST:     GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169069505|gb|FE480576.1|FE480576
EST:     GGATGCTTGCTAAGCTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GACGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATGCGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169092698|gb|FE494927.1|FE494927
EST:     GGATGCTTGCTAAGCTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GACGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATGCGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG
EST: gi|169044545|gb|FE450610.1|FE450610
EST:     GGATGCTTGCTAAGCTGTTTCCTAGTAAAATATATGTGCAGCAACCACAG                         GACGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATGCGGAG
genomic: GGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 16

TCTTTCTACGCGAGCTGAAGACTATAAACCAGATGGTTCCAAATGCTCTAGGATGCTTGCTAAACTGTTTCCTAGTAAAATATATGTGCAGCAACCACAGgtaatgaaga ... ttatgatcagGATGAAAATATGTTACTCGTGTGGAATCGTCAACTCGAACAGGATACGGAGAGGCTGAAAGCGGAAGCGAACAGACAACTTCTGCGAATT




<











<


<