1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGGACGGGGCATTCCACAAGAGGCTCAACAAAGCTGGAATATTTTCTGTGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatgaaagttagttttttctttctctctctctgtcagctcatgtagttggtctggcgcag
species | Selaginella moellendorffii |
transcript | EFJ34469 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAAC ATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCATEST: gi|169058295|gb|FE466036.1|FE466036
genomic: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatg ... tctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
EST: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAAC ATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCATEST: gi|169051073|gb|FE460206.1|FE460206
genomic: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatg ... tctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
EST: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACNAAAC ATTCTTGGAAGTGGCATGTCAAATAAAATGTGGGAAGGAACAGTGGAGCATEST: gi|169080154|gb|FE488365.1|FE488365
genomic: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatg ... tctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
EST: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAAC ATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCATEST: gi|169098535|gb|FE498539.1|FE498539
genomic: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatg ... tctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
EST: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAAC ATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
genomic: TGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatg ... tctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGACGGGGCATTCCACAAGAGGCTCAACAAAGCTGGAATATTTTCTGTGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatgaaagttagttttttctttctctctctctgtcagctcatgtagttggtctggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA