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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATAACCTTTACAACCACCTCAAGTTTACGGTTTATTTTCACAAGGATCAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggctcattttttattttgatttgactcggaactcggaacctgatactggtttttgtggttag

Basic information

species Selaginella moellendorffii
transcript EFJ33415
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169018854|gb|FE427039.1|FE427039
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169075702|gb|FE481776.1|FE481776
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169115215|gb|FE516970.1|FE516970
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169029206|gb|FE439711.1|FE439711
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169024527|gb|FE436285.1|FE436285
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169025118|gb|FE434705.1|FE434705
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169041649|gb|FE448232.1|FE448232
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169088824|gb|FE494388.1|FE494388
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169031680|gb|FE437481.1|FE437481
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169029116|gb|FE439374.1|FE439374
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169087552|gb|FE494643.1|FE494643
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169095949|gb|FE497301.1|FE497301
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169081742|gb|FE488200.1|FE488200
EST:     CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
EST: gi|169031898|gb|FE440650.1|FE440650
EST:     C-GGATCAGGATTTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAG                         TGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC
genomic: CAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 27 (upstream exon), 33 (downstream exon)
Score: 26

AGTATAACCTTTACAACCACCTCAAGTTTACGGTTTATTTTCACAAGGATCAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGGTGTTCCCCTTGAGgtttgtggct ... ttgtggttagTGTGAAGCACACCTACGAATCATGGAACAAAAATAATCCGAAACTACAGACTTGTAACCCCGAAGGCAAACAGTTCGTTGAATCTTCAAAGACACCACAA




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