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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgttttatcagtggcgaaaggataaagctctgacttcttttctttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32604 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 2
GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtt-ttatcagtggcgaaaggataaagctctgacttc-ttttctttgcag----------------------------------------------
 | |||||||||||||||||| |||||||||||||| ||  | || || || ||  |  | |||    ||||||||||||  |  || ||| |    |         |   ||  ||  | |    | |||                                              
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt

upper sequence: EFJ32604 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 5
-----------------------GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtt-ttatcagtggcgaaaggataaagctctgacttcttttct-ttgcag----------------------------------------------
                        | |||||||||||||||||| |||||||||||||| ||  | || || || ||  |  | |||    ||||||||||||  |  || ||| |    |         |   ||  ||  | |    | |||                                              
CTCTGGGTTTTCCTTGCGTGCAGATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169023493|gb|FE431404.1|FE431404
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169041587|gb|FE449548.1|FE449548
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169036059|gb|FE446765.1|FE446765
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169094385|gb|FE495585.1|FE495585
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169087333|gb|FE491746.1|FE491746
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169053831|gb|FE460922.1|FE460922
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169051134|gb|FE458681.1|FE458681
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169048578|gb|FE454447.1|FE454447
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169019270|gb|FE428183.1|FE428183
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169096116|gb|FE500276.1|FE500276
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169082303|gb|FE488046.1|FE488046
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169087154|gb|FE493101.1|FE493101
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169098871|gb|FE502268.1|FE502268
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169025097|gb|FE434697.1|FE434697
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169077299|gb|FE485601.1|FE485601
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169036890|gb|FE443850.1|FE443850
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169080654|gb|FE487175.1|FE487175
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169075645|gb|FE482031.1|FE482031
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169062067|gb|FE469152.1|FE469152
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|70670986|gb|DN839563.1|DN839563
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169074936|gb|FE483818.1|FE483818
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169088141|gb|FE493380.1|FE493380
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169053051|gb|FE462014.1|FE462014
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169061498|gb|FE469597.1|FE469597
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169032798|gb|FE438306.1|FE438306
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACGG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169019625|gb|FE427974.1|FE427974
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169097028|gb|FE498419.1|FE498419
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169047243|gb|FE456492.1|FE456492
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169088635|gb|FE491521.1|FE491521
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169087281|gb|FE491694.1|FE491694
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169030300|gb|FE440025.1|FE440025
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169102882|gb|FE505247.1|FE505247
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169035576|gb|FE445346.1|FE445346
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169094800|gb|FE492951.1|FE492951
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169088706|gb|FE491540.1|FE491540
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169087447|gb|FE492224.1|FE492224
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169105943|gb|FE504303.1|FE504303
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
EST: gi|169075799|gb|FE482796.1|FE482796
EST:     CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAG                         TTAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG
genomic: CCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 171

GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtttta ... ttctttgcagTCAATGTGCAGTCATTATCTGGTTCTCCAGCAAACTTTCAAGTGTATACAGCTTTGCTTAAACCACACGAAAGAATTATGGCTCTTGATTTACCTCACGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgttttatcagtggcgaaaggataaagctctgacttcttttctttgcag

- - - - - - - - - - - - - - - - - - - - - AGAAGC