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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGAGCTGGTGTCGACGAAGCGGTGGTAGCACCTCTGTGCTGTGTTCCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATACTTTgtcacttacaggcaagcttttccggggcttttactttctttcgttcactctgtcgctctcataag

Basic information

species Selaginella moellendorffii
transcript EFJ32311
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169079522|gb|FE486888.1|FE486888
EST:     CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATAC---                         ---TTTG--TC--ACTTACAGACACTGGCCAGGTATGGAGCTGGGGATATG
genomic: CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATACTTTgtcacttaca ... ctctcataagTGTTTTGTTTCGGA-TTTTAGACACTGGCCAGGTATGGAGCTGGGGATATG
EST: gi|169088319|gb|FE492037.1|FE492037
EST:     CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATAC---                         ---TTTG--TC--ACTTACAGACACTGGCCAGGTATGGAGCTGGGGATATG
genomic: CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATACTTTgtcacttaca ... ctctcataagTGTTTTGTTTCGGA-TTTTAGACACTGGCCAGGTATGGAGCTGGGGATATG
EST: gi|169029246|gb|FE439725.1|FE439725
EST:     CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATAC---                         ---TTTG--TC--ACTTACAGACACTGGCCAGGTATGGAGCTGGGGATATG
genomic: CCAATGCCTGCCAAAGTTATTCTTGTCGCAACGGGAGGGCGACATACTTTgtcacttaca ... ctctcataagTGTTTTGTTTCGGA-TTTTAGACACTGGCCAGGTATGGAGCTGGGGATATG