1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGTTGTGGAGCTGGTCGGCGATTACACCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTTgtgagtcatcacgaaaaaccatcgcttctagcgctctaatgtttcttctttccttgcag
species | Selaginella moellendorffii |
transcript | EFJ31600 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTT AGGCTCTTGGGAGTGAAAATGGCTCCCTTTANAATGAGCCTTTTGTGTCGCEST: gi|169039865|gb|FE447551.1|FE447551
genomic: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTTgtgagtcatc ... ttccttgcagAGGCTCTTGGGAGTGAAAATGGCTCCCTTTAGAATGAGCGTTTTGTGTCGC
EST: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTT AGGCTCTTGGGAGTGAAAATGGCTCCCTTTAGAATGAGCCTTTTGTGTCGCEST: gi|169028147|gb|FE432152.1|FE432152
genomic: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTTgtgagtcatc ... ttccttgcagAGGCTCTTGGGAGTGAAAATGGCTCCCTTTAGAATGAGCGTTTTGTGTCGC
EST: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTT AGGCTCTTGGGAGTGAAAATGGCTCCCTTTAAAATGAGCCTTTTGTGTCGC
genomic: CCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTTgtgagtcatc ... ttccttgcagAGGCTCTTGGGAGTGAAAATGGCTCCCTTTAGAATGAGCGTTTTGTGTCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGTGGAGCTGGTCGGCGATTACACCGTGTGTCGAGAAGGCGAAGCAATCTCGCCAGAAGCATCGCGGATACTTgtgagtcatcacgaaaaaccatcgcttctagcgctctaatgtttcttctttccttgcag
- - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC