1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCCATTGGTGGAATGCGAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaaggatttatttgttctttgctgtttcagcgtccttggcaaacag
species | Selaginella moellendorffii |
transcript | EFJ29959 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAG GGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCAEST: gi|169064917|gb|FE475613.1|FE475613
genomic: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaagg ... tggcaaacagGGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
EST: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAG GGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCAEST: gi|169051941|gb|FE459045.1|FE459045
genomic: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaagg ... tggcaaacagGGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
EST: GAGGGATTAAAGGCATGCTTTGGGAGACGTCCCTGCTCGATCCTGAAGAG GGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCAEST: gi|169033441|gb|FE441794.1|FE441794
genomic: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaagg ... tggcaaacagGGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
EST: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAG GGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCAEST: gi|169059112|gb|FE468257.1|FE468257
genomic: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaagg ... tggcaaacagGGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
EST: GAGGGATTAAAGGCATGCTTTGGGAGACGTCCCTGCTCGATCCTGAAGAG GGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
genomic: GAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaagg ... tggcaaacagGGTATTCGTTTTCGGGGCTTGTCCATTCCAGAGTGTCAAGAGAAGCTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATTGGTGGAATGCGAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaaggatttatttgttctttgctgtttcagcgtccttggcaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA