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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCTATGTGACCATGTTCCCGTGCAACGAGTGTGCCAAAGTCATAATCCAGgtactgaaatcttaccaccctcgcgactaaacttctcgtttgtcttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ28892
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28892 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA05G03380.1 (Glycine max), 5'ss of exon 7
AGGCTCTATGTGACCATGTTCCCGTGCAACGAGTGTGCCAAAGTCATAATCCAGgtactgaaatcttaccaccctcgcgactaaacttctcgt--ttgtcttttcag------------------------------------------------
 |||| |||||||||||||| |||||||| || ||||| ||  |||||||||||||   | || |||      || |      ||  | | ||  |      ||| |                                                
CGGCTATATGTGACCATGTTTCCGTGCAATGAATGTGCTAAGATCATAATCCAGgt-tggtaaccttgttctgcttgacgtataatatgttgtgatgaatcattctgcagatcagatctgcattttatatcaaagaatataacttttatgagaaa

upper sequence: EFJ28892 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv17s0000g01370.t01 (Vitis vinifera), 5'ss of exon 7
AGGCTCTATGTGACCATGTTCCCGTGCAACGAGTGTGCCAAAGTCATAATCCAGgt-actgaaatcttaccaccctcgcg-actaaacttctcgtttgtcttttcag-----------------------------------------------
||||| |||||||||||||| || |||||||| ||||||||  | || || ||||| |   || | |   | |  | |   |    ||     | || |||||   |                                               
AGGCTTTATGTGACCATGTTTCCTTGCAACGAATGTGCCAAGATAATCATTCAGgttatccaactgtcttctctgtagtatatgcgacagtatgattatctttgatgcagtaactgccctttggaaatgccatatacctcatagtatcaaaccc