1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAAACTCGACGCTGAGCTCAAGTCTTGGCTAGCATTTGCTGCTCAGAAGATCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcatagatttcatgttttgcatttctaagtatttgttcgtctccag
species | Selaginella moellendorffii |
transcript | EFJ28889 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169053883|gb|FE460974.1|FE460974
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169032658|gb|FE436931.1|FE436931
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169027729|gb|FE434866.1|FE434866
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169060120|gb|FE468106.1|FE468106
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169061439|gb|FE469538.1|FE469538
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCTEST: gi|169109744|gb|FE511815.1|FE511815
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
EST: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAG GAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
genomic: TCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcat ... tcgtctccagGAGTTCTTTGCGGCCAATGCATCTGCTCAGGCCTCTAGGAAGACGTCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAACTCGACGCTGAGCTCAAGTCTTGGCTAGCATTTGCTGCTCAGAAGATCGTCGAAGTCGTTAGTCTTGCTGGGGCTCTCGGTGGAAAGAAGGATGAGgtgcgttcatagatttcatgttttgcatttctaagtatttgttcgtctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG