1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGAAGGGAACAAAGGGTGATGTAAGCGTGTTAAGGCCGACGCTGATGACTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgactatttttcattggattctatctctaacatgactttcgctttgccag
species | Selaginella moellendorffii |
transcript | EFJ27012 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCAAAGGGCGGTGCTGCAAAAAAGCTTTTCGACCTTGCCTATCGAEST: gi|169114439|gb|FE516312.1|FE516312
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGCCAAAAAGCTTTTCGACCTTGCCTATCGA
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCAAAGGGCGGTGCTGCAAAAAAGCTTTTCGACCTTGCCTATCGAEST: gi|169068348|gb|FE479172.1|FE479172
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGCCAAAAAGCTTTTCGACCTTGCCTATCGA
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCAAAGGGCGGTGCTGCAAAAAAGCTTTTCGACCTTGCCTATCGAEST: gi|169025464|gb|FE436078.1|FE436078
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGCCAAAAAGCTTTTCGACCTTGCCTATCGA
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCAAAGGGCGGTGCTGCAAAAAAGCTTTTCGAACTTGCCTATCGAEST: gi|169020907|gb|FE431985.1|FE431985
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGCCAAAAAGCTTTTCGACCTTGCCTATCGA
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCANAGGGCGGTGCTGCAAAAAAGCTTTTCGACCTTGCCTATCGAEST: gi|169071984|gb|FE478193.1|FE478193
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGCCAAAAAGCTTTTCGACCTTGCCTATCGA
EST: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGTGTCAGAAAAACG GTTGATGCAAAGGGCGGTGCTGCNNNNNNNNGCTTTTCGACCTTGCCTATC
genomic: CTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgac ... gctttgccagGTTGATGCAAAGGGCGGTGCTGC--CAAAAAGCTTTTCGACCTTGCCTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAAGGGAACAAAGGGTGATGTAAGCGTGTTAAGGCCGACGCTGATGACTGCAGTCCCTGCAATTCTTGATCGTATCCGAGATGGAGTCAGAAAAACGgttcgctgactatttttcattggattctatctctaacatgactttcgctttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA