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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacttgcattttcag

Basic information

species Selaginella moellendorffii
transcript EFJ26184
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26184 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 5
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacttgcattttcag----------------------------------------------------
||||| ||||||||||| |||||||| || |||||||| |||||||| |  ||  |||   |||||||||| ||||| ||||| |||||||| || |||||| |   | | |||| |  | |  |       ||      | ||  | |                                                    
TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttat-cgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata

upper sequence: EFJ26184 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S9_241V6.1 (Physcomitrella patens), 5'ss of exon 5
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacttgc------attttcag----------------------------------------------
||||| || || ||||||||||| || |||||||| || || ||||| |  ||  | |   |||| |||||||||||||| ||||| |||||||| ||||||  ||||||  ||| |  |  |       ||   | ||||      |||| |||                                              
TGGGATTTAACCGCTGGGAAGCTAATGCATGATTTCAAATATCATGAAGGACAAGTCCAATGTCTGGACTTCCATCCTCACGAATTTCTTCTTGCTACAGgta-ggctttctgtgctgctgttctggacgttttgaattgcctcaggatttgcagttatatctttctttgatatgcagatgctggttcaaacgttggtttg