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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAACGAGGGATACACTTCTCATGAGGATGAAGAAATCTCAGTGGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccatcagtctttcagactgctcgtctgagaaaagtgactttatgcactgcag

Basic information

species Selaginella moellendorffii
transcript EFJ26070
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169066403|gb|FE474626.1|FE474626
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169056499|gb|FE464907.1|FE464907
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169115518|gb|FE518027.1|FE518027
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169105718|gb|FE508484.1|FE508484
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169056498|gb|FE464906.1|FE464906
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169066404|gb|FE474627.1|FE474627
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|70671166|gb|DN839743.1|DN839743
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
EST: gi|169105719|gb|FE508485.1|FE508485
EST:     GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAG                         GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG
genomic: GGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 16

GGATAACGAGGGATACACTTCTCATGAGGATGAAGAAATCTCAGTGGGACGAGGTTATCAATCTCAACCTTTCTGGGGTTTTTCTGTGCACACAGgttcgtccat ... tgcactgcagGCTGCTACGAAAGTCATGATGAAGAAGAAAAAG




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