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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCACTgtgagataaaacttactggttacgcccgcagaaacgttgttactttccag

Basic information

species Selaginella moellendorffii
transcript EFJ23906
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23906 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA04G01220.1 (Glycine max), 5'ss of exon 6
TTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCACTgtgagataaaacttactggttacgcccgcagaaacgttgttactttccag------------------------------------------------
| |   | |  | |||||||| ||||||||  ||||||| |||||||| |||||||| || |||   || || ||||||||||| |||||||| ||   |||  |   |||    ||  |   ||      |     ||||   |    |                                                
TCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTGTGGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCATgtatgtataaataccctcttctagctatttaatgatctgtttaatgatggtttaagactgctgaaactgcttgatgcttctttggaaacattactcag

upper sequence: EFJ23906 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 7
TTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCACTgtgagataaaacttactggttacgcccgcagaaacgttgttactttccag-------------------------------------------------------
| |   | |  | |||||||||||||||||| |||| || |||||| | |||||||| || |||   || |||||||||||||| ||||| || ||   |||| |  ||||  |  |  ||            || |  | | ||   ||                                                       
TCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTCATgtgcgtgaaaatgtttttcttctatt-attcttacttcataaattcgtagagccttcaaaatatgctgtataactttgtctctggggtttggaatttctcctcag

upper sequence: EFJ23906 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
TTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCACTgtgagataaaacttactggttacgcccgcagaaacgttgttactttccag---------------------------------------
  |   |    | || || || ||||||||| |||||||||||||||||||||| || || ||    ||||| || ||||| || ||||| || ||   |||||         | ||| ||||        |    |||||    || |                                        
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccatttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag