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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTACTGGCATTGTGGATTTCACCAATTATGACGATATGAAATACGCGgttaatttttctttctgtatattctcttttgctggactggagattgattctagtgttttttgacag

Basic information

species Selaginella moellendorffii
transcript EFJ21034
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ21034 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S173_12V6.3 (Physcomitrella patens), 5'ss of exon 9
---GAACTACTGGCATTGTGGATTTCACCAATTATGACGATATGAAATACGCGgt-----taatttttctttctgtatattctcttttgctggactggagattgatt--cta-----gtgttttttgacag-----------------------------------------------------------------
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CTGGAACAATGGGCATTGTGGATTTCACCAACTACGACGATATGAAATACGCCgtaagtatggtatctagactggcatttctcttctcggctgactgcatgtatgtcacctacatgcatgtcttcagatgatttgtttgttctatcgcatctcgtatttattttttatttttatttttatttttatttttttgtag

upper sequence: EFJ21034 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S28_193V6.3 (Physcomitrella patens), 5'ss of exon 8
--------------------------------------------------GAACTACTGGCATTGTGGATTTCACCAATTATGACGATATGAAATACGCGgttaatttttctttc----------tgtatattctcttttgctggactggagattgattctagtgttttttgacag-----------------------------------------------------
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TAGGGCTGGTGATGTGTGCTTTGCACAAGTTTTTCGTGATGGCACTTCGGGAACAATGGGCATCGTGGACTTCACGAATTATGATGATATGAAATACGCTgtaagtttgaattctgcgacaaagatgtacgtgtaaatttgctcgaccatgaaccggacctgacaaggcataaatacatgcttacagataaacattttcgaaacatgcagtaatttatgtgttctgcag