1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAAGAGTTTGTGATGACGAAGGACGAATTTTCTGGAGCTGACATCAAGGCAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctcgatgcttttcacaactttcttgtaacgattttcttcttctccag
species | Selaginella moellendorffii |
transcript | EFJ20767 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGEST: gi|169065781|gb|FE474371.1|FE474371
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGEST: gi|169113680|gb|FE514786.1|FE514786
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGEST: gi|169060659|gb|FE467397.1|FE467397
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGEST: gi|169040852|gb|FE447903.1|FE447903
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGEST: gi|169046408|gb|FE457399.1|FE457399
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
EST: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAG GTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
genomic: CAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctc ... tcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAGTTTGTGATGACGAAGGACGAATTTTCTGGAGCTGACATCAAGGCAATGTGCACTGAAGCTGGGCTTCTGGCACTAAGAGAACGGCGGATGAAGgtagtttctcgatgcttttcacaactttcttgtaacgattttcttcttctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA