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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGCATCAACTGGATCTACAATTTGCGTCGAACATAGCAACTCGCTCTTCTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAGgtagccttttcatcctgagagctatgactgagttttgttttttctttctatttcag

Basic information

species Selaginella moellendorffii
transcript EFJ20213
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20213 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 6
CGCGCATCAACTGGATCTACAATTTGCGTCGAACATAGCAACTCGCTCTTCTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAGgtagccttttcatcctgag-agc-tatgactgagttttgttttttctttct------atttcag--------------------------------------------
 || ||    |||||   ||| ||||     |||   | | | ||  || |||||||||| |||||||| ||||| ||| |||| ||  ||||||||||||||    ||  |||||    ||| |||   |  || | |||   || ||||      ||||||                                             
TGCTCAAGTTCTGGAGAAACAGTTTGTCGGAAACCCTGAATCGCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGGATTGGTTATGAGgtaaaagttagatcctttttagcgtattttttggtatagttagctccttcttagtggatttcattatgcaaatgcctgataaagaactgtatctgcttcgtcttgcag

upper sequence: EFJ20213 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 5
CGCGCATCAACTGGATCTACAATTTGCGTCGAACATAGCAACTCGCTCTTCTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAGgtagcc--ttttca-----tcctgagagctatgactgagttttgttttttctttctatttcag-------------------------------------------
 || |    ||||||    || ||  |    ||    | | ||||  || |||| ||||| ||||| |||||||| ||| | || |||||||||||||||||| |    |||||     |  ||||  || ||| |  | | ||||| | ||   ||| |  |                                           
TGCTCGAACACTGGAGAGGCAGTTCTCCGGAAATGCTGAATCTCGAGCTGCTGGCATGGTGATCAATACCATGGGATGGATAGAAGGTGTTGGTTATGAGgtaactaagtttcaggcttttatgagcactttgattatgctgtgtttctactgaatatgtgtgatttgttgtttaatgcttccttctggtttatgccttattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169049159|gb|FE457147.1|FE457147
EST:     CTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAG                         TTGCTTCTGCATTCCATCGAGGCGCTAAATGCTAATGTCATTCTGGTTTTG
genomic: CTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAGgtagcctttt ... tctatttcagTTGCTTCTGCATTCCATCGAGGCGCTAAATGCTAATGTCATTCTGGTTTTG
EST: gi|169049160|gb|FE457148.1|FE457148
EST:     CTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAG                         TTGCTTCTGCATTCCATCGAGGCGCTAAATGCTAATGTCATTCTGGTTTTG
genomic: CTGGAATGGTTATCAACACCATGGGCTGGGTCGATGGTGTTGGTTATGAGgtagcctttt ... tctatttcagTTGCTTCTGCATTCCATCGAGGCGCTAAATGCTAATGTCATTCTGGTTTTG