1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCGGCCTCGCGAAAGATGGCCCGGAAGGAGACAAGACGCATGTTTCCACACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcacaaggaaagaaaaaaacttgagagttcttgaacttaaaaggatcgtacctttgtttcctccag
species | Selaginella moellendorffii |
transcript | EFJ19239 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGGEST: gi|169080966|gb|FE489216.1|FE489216
genomic: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
EST: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGGEST: gi|169080376|gb|FE488938.1|FE488938
genomic: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
EST: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGGEST: gi|169074909|gb|FE483804.1|FE483804
genomic: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
EST: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGGEST: gi|169074908|gb|FE483803.1|FE483803
genomic: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
EST: GCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGGEST: gi|169095414|gb|FE497520.1|FE497520
genomic: GCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
EST: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTG GTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
genomic: ACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcac ... tttcctccagGTCACTTGACAGCCAGGAGCGATGTTTACAGCTTTGGAGTTGTCTTCCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGCCTCGCGAAAGATGGCCCGGAAGGAGACAAGACGCATGTTTCCACACGAATCATGGGAACTTACGGCTACGCAGCTCCCGAGTACGTGATGACTGgtaagttcacaaggaaagaaaaaaacttgagagttcttgaacttaaaaggatcgtacctttgtttcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC