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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTCGAGAATGGTTCTCTGGCTAGCATTGTTAAGCCGAACAAATTTGGCGCATTTCCAGAGTCACTTGTTGCCgtatacattgctcaggcatgtataaattacaaagaagtggagtgctaactcgatattcacag

Basic information

species Selaginella moellendorffii
transcript EFJ18166
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18166 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S99_12V6.1 (Physcomitrella patens), 5'ss of exon 4
GTATGTCGAGAATGGTTCTCTGGCTAGCATTGTTAAGCCGAACAAATTTGGCGCATTTCCAGAGTCACTTGTTGCCgtatacattgctcaggcatgtataaattacaaagaagtggagtgctaac---tcgatattcacag--------------------------------------------------
|| ||| || ||||| ||||||||||||||  |||| || ||||||||||| || |||||||| ||  | || || || |||||||| ||||   | |    |   ||     |      || ||   || || |     |                                                  
GTTTGTGGAAAATGGATCTCTGGCTAGCATAATTAAACCAAACAAATTTGGAGCGTTTCCAGAATCTTTGGTCGCTGTGTACATTGCCCAGgttagcacctttggtaattgcatatttcacttacgtttcaatgtggtgcgttatatttttgtttcgtgtagcaatatctttttggctaggtaaggtttag

upper sequence: EFJ18166 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 5
GTATGTCGAGAATGGTTCTCTGGCTAGCATTGTTAAGCCGAACAAATTTGGCGCATTTCCAGAGTCACTTGTTGCCgtatacattgctcaggcatgtataaattacaaagaagtggagtgc-----taactcgatattc-acag-----------------------------------------------
 | ||| ||||||||||||||||||| || | ||||||| |||||||| || ||  |||| ||     |||| |     |||||||||||||  |||    || |||   |   ||    |     | |     | ||| | ||                                               
ATTTGTTGAGAATGGTTCTCTGGCTAACAATATTAAGCCCAACAAATTCGGGGCTCTTCCTGAAAACGTTGTGGGACGCTACATTGCTCAGgtgtgtcacgataacatttattcggttcaccttggtgatgtagtgttctagagacacacttttaacgtgttcggaaatgatatgtcagacattgtaaata