Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacag

Basic information

species Selaginella moellendorffii
transcript EFJ18071
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 3
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttc--------tttgagtg------ttcttttgttctatcactctcttatcattctg--tcttttaccacag-----------
|| |||||| |   |||||| || || || || |||||| ||||||||||||| || || || |||||||||||||| ||||| ||||| || ||||||||| |        ||||  |       | | ||||    ||  | |    |  | ||||  | || ||||               
GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgcatgcccgttttgcatacgtgattacctttggataattgcacatccagtaatctgatttttctaccctgttctgataatag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os04g37500.1 (Oryza sativa), 5'ss of exon 2
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttct--ttgagtgttcttttgttctatcactctcttat-cattctgtcttttaccacag-------------------------------
|| |||||| |   |||||| || || || || |||||| ||||||||||||| || || || |||||||||||||| ||||| ||||| || ||||||||  |    | | | |||     ||  || |  |    ||  ||   ||    ||  |||                                
GTCATCTGGCGCAACAAGGAGGACCTCCCCGAGGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgcacgaaattatttttccagaattaaatgatccgtacatatatagagtggagtagtacattttgtgacttggcaagttcatttttgtgcag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os03g51080.1 (Oryza sativa), 5'ss of exon 5
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgagtgttcttttgttctatcactctcttatcattctgtctttt-accacag-------------------------------------------------------------------------
   ||||||||  ||||||| ||||| || || |||||| ||||||||||||| || || || ||||||||||| || ||||| ||||| || ||||| |||          |   |||||| |  || | |       |  ||  | || |   |                                                                           
TGCATCTGGAGGAGCAAGGAGGATCTGCCTGAGGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAGGgtaaaaatctcctctctttgttttgacagttttacggtttcttgaatcttgatggctatgtcagttcggttcatctggttacatgcatgatgcacgcacacaataacagaatggcacaatcttttttccag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G101069_T01 (Zea mays), 5'ss of exon 5
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttc------tttgagtgtt-cttttgttctatcactctcttatcattctgtcttttaccacag-------------------------------------------------------------
|| ||||||||  ||||||| || || || || |||||| ||||||||||||| || || || ||||||||||| || ||||| ||||| || ||||||||| |      | |   ||||  |  |||   ||   | | ||  ||   | | |||   |  ||                                                             
GTCATCTGGAGGAGCAAGGAGGACCTCCCCGACGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCCACCTTCACGCTCAACTTCTCCAAAGgtacggtaactctagctgttgttcctgtctgatggatttgttcgcagattatatttccactgagcaaacaaattacagtgacttcatcttctctgccttccttctctcttttggacgacatacag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM5G826838_T01 (Zea mays), 5'ss of exon 5
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgt-tctttgagtgttcttttgttctatcactctcttatcat-tctgtcttttaccacag------------------------------------------
   ||||||||   |||||  || || ||||| |||||| ||||||||||||| || || || ||||||||||| || ||||| ||||| || |||||||||  | ||    | || ||| | |     || |  |    | | |||| |    ||||                                           
TGCATCTGGAGGACCAAGGTGGACCTGCCGGAGGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAGgtgccattttcggctcctttttccgtgttctttgatgcagtgtgtgtcgtcagtcacaagcaggcaggctaatctggtcatggcgcacaaaacaatttcag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 5
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgagtg--ttcttttgtt---ctatcactctcttatcattctgtcttttaccacag------------------------------
||| | |||||  |||| || ||  | || ||||| ||  |||| ||||| || || ||||||||||| || ||||| |||||||||||||| |||||||||   |  |     ||||||  |      ||  |  |  || | || ||||| | | ||||                               
GTTGTTTGGAGGAGCAAAGAGGACTTGCCCGAAGAACTTATCTTTCACATAAACTACCTTGGAGCCGATCAACCAACCTTCACTCTCAATTTCTCCAAAGgtgactcaaacaaattctttgatcaagtcattgccattatagccttttgtctctcaacacaatctaaagttgtaactgcatgacatctgcag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv04s0079g00600.t01 (Vitis vinifera), 5'ss of exon 4
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttcttt----gagtgttcttttgttctatcactctcttatcatt-ctgtcttttaccacag-----------------------------
|| || |||||  | || || ||  | || || |||||| |||| || ||||| ||||||||||||||||| || || ||||| ||||| || ||||||||| |  |     | |  |  |   |  |     ||| || | ||     |  | ||   ||                              
GTGATTTGGAGGAGTAAAGAGGACTTGCCCGATGAGCTCATCTTTCATATCAACTATCTTGGAGCCGACCAACCTACCTTCACCCTCAACTTCTCCAAAGgtccccttccaaactactgctacatctttgagatcttttttgatgatcataatataatgcatgctaagtattaattttcctcccaatgcag

upper sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S10_153V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacag----------------------------------------------
||  | ||| |    || ||||| || || || ||| | || || ||  ||||||| || ||||| |||||||| || || || |||||||||||||||||||  | |||   |||   | |  ||  |    |||  |||      ||  |||  |                                              
GTGGTATGGCGCTCTAAAGAAGACCTCCCCGAGGAGTTGGTTTTTCATGTCAATTACCTGGGAGCTGACCAGCCTACCTTTACCCTCAATTTTTCCAAAGgtttgtagagctctct---gcttcatggcctctttacaattgacagattctccatggattgtgatttatattcacccaaacaatcggcaattttaatgagatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169063237|gb|FE472695.1|FE472695
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169027575|gb|FE432749.1|FE432749
EST:     AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169030243|gb|FE440579.1|FE440579
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169031370|gb|FE441186.1|FE441186
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169040841|gb|FE447892.1|FE447892
EST:     CAGCCAACTTTCACTTTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169066369|gb|FE473045.1|FE473045
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169026893|gb|FE434244.1|FE434244
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169108571|gb|FE510786.1|FE510786
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169072349|gb|FE480248.1|FE480248
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169093054|gb|FE494165.1|FE494165
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169030182|gb|FE437086.1|FE437086
EST:     TTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: TTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169043268|gb|FE451270.1|FE451270
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169019232|gb|FE428145.1|FE428145
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169045969|gb|FE451240.1|FE451240
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169049329|gb|FE458240.1|FE458240
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169064341|gb|FE471904.1|FE471904
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169080212|gb|FE488384.1|FE488384
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169030244|gb|FE440580.1|FE440580
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169042691|gb|FE451510.1|FE451510
EST:     AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169054362|gb|FE460807.1|FE460807
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169034081|gb|FE442802.1|FE442802
EST:     GAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: GAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169075986|gb|FE482853.1|FE482853
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169025801|gb|FE433100.1|FE433100
EST:     GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169075460|gb|FE483094.1|FE483094
EST:     GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169060993|gb|FE470623.1|FE470623
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169027576|gb|FE432750.1|FE432750
EST:     CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169098883|gb|FE502280.1|FE502280
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: gi|169098884|gb|FE502281.1|FE502281
EST:     CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG                         GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 117

GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG