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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTAGgtgcacaagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgattctcag

Basic information

species Selaginella moellendorffii
transcript EFJ18043
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18043 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCT---CCTGAATTTAGgtgca---caagttttcaaggtttttcttatcaata-------cttgacgggacattcgtggaattttgattctcag-------------------------------
   |||| ||| ||| |||||| |||||||| || ||||| |||||||||||||| || ||||| ||  | ||| | || || |  |||   ||||| || ||||  |   |   |||   |  |   || |||  | |        |  | |  |   |  ||   || ||||  | |                                
---AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag

upper sequence: EFJ18043 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 5'ss of exon 5
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC---TCCTGAATTTAGgtgcac-----aagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgattctcag------------------------------
   | |||||| | |||||||| |||||||| |||||||| || || || ||||||||||| || ||| ||||| | || ||||  ||   |||||| |||||||| |      |||  |  || | |  || |    | |  || | | ||| |  |||||| |  |   |||                               
---AGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATTTTAGgtgaattgtgtaagactgtaatgatagtcatggtcagaaatgcctgaacact--tggaatctgcacggtcaaagataaaaaaaaatccaggaatagtttaat