1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCAAGGAAGGACTGCTCGTTGGTATTTCATCTGGAGCTGCTGTTGCAGCTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtgtactagttgccattctggagatgatattgagagcgtacaatgcag
species | Selaginella moellendorffii |
transcript | EFJ17923 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTG GTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAGEST: gi|169062207|gb|FE469721.1|FE469721
genomic: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtg ... tacaatgcagGTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
EST: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTG GTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAGEST: gi|169055710|gb|FE465328.1|FE465328
genomic: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtg ... tacaatgcagGTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
EST: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTG GTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAGEST: gi|169040531|gb|FE449246.1|FE449246
genomic: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtg ... tacaatgcagGTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
EST: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTG GTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAGEST: gi|169056757|gb|FE465984.1|FE465984
genomic: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtg ... tacaatgcagGTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
EST: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTG GTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
genomic: CTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtg ... tacaatgcagGTGATTCTTCCAAGCTTTGGCGAACGTTACCTCTCGTCGGTCTTGTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAAGGAAGGACTGCTCGTTGGTATTTCATCTGGAGCTGCTGTTGCAGCTGCGATCCAGATTGCGAAGAGACCCGAGAATGAGAACAAGCTCATTGTGgtaagttgtgtactagttgccattctggagatgatattgagagcgtacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA