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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAACCAGAGGAGTTGACGAGGAAATGCTCGTGCAAACATTACCTCTGGATCTCCGACGCGATATCAAGCGCCATCTTTGTTTGGACCTTGTTCGACAAgtaagcaaaatgatccatcagtgtttggcaaaccatgagtttgacgtttctttctccag

Basic information

species Selaginella moellendorffii
transcript EFJ17870
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17870 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os09g38580.5 (Oryza sativa), 5'ss of exon 6
CACAACCAGAGGAGTTGACGAGGAAATGCTCGTGCAAACATTACCTCTGGATCTCCGACGCGATATCAAGCGCCATCTTTGTTTGGACCTTGTTCGACAAgtaagc-aaaatgatccatcagtgtttggcaaaccatgagtttgacgtttctttctccag---------------------------------------------------------------------------------------------------------------------------
  ||||  ||||||| || ||||||    || | ||| | || |||   ||| | || || ||| |  ||||||||||||||||||||||||||||||  |||||      | ||  |      |||   |    || |||   | ||||   | ||                                                                                                                              
TGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTgtaagttgtggttatttacttacatttca-actgaattagtagaatgttttagtttctgaaaggttttagatgttaaattttctagtggcattctgtcgtttggatggaaaaatcagtgacaaaagtaccaccagtgctacttcatagtctagcatgttttcttatcccttcctaaaatgcag

upper sequence: EFJ17870 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: Vv04s0069g00790.t01 (Vitis vinifera), 5'ss of exon 6
CACAACCAGAGGAGTTGACGAGGAAATGCTCGTGCAAACATTACCTCTGGATCTCCGACGCGATATCAAGCGCCATCTTTGTTTGGACCTTGTTCGACAAgtaagcaaaatgat-ccatcagtgtttggcaaaccatga---gtttgacgtttctttctccag-------------------------------------
  | ||  | |||||||| || ||     |  | |   | ||||||   ||| | || || |||||| |||||||||| || ||||||||||||||||  |||||     |      || |      | || | ||  |   |||    |||||  | |  |                                      
TGCTACTCGTGGAGTTGATGAAGAGTCAATTTTACGTGCCTTACCTACAGATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGTgtaagttccctagcattattaacaagggccataacacaatctgttcactgtttcaattttaaaaatgtcaatacatctgcagacagtataaaagtataca