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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGCgtaagtcttttgctttgctttgctttatttgcttacgagctaactcgtgcttgcaatttttatcag

Basic information

species Selaginella moellendorffii
transcript EFJ17245
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17245 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S32_43V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGCgtaag----tcttttgctt----tgctttgctttatttgcttacgagctaactcgtgcttgcaatttttatcag-----------------------------------------------------------
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GCTGCATTACCACAAGGCATTGTACCATTTGTGTTCGCAAAGGAATACAATGTGCATCCAGAGATCCTCAGCACTGCgtaagcacctctttttctcaccgcacttcacgacttctggtttttttttttttttttttttttgtttttgtaaagatttctgatttatgattagtgaagtggttttgacagtgggtctcatttgctttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169110755|gb|FE509316.1|FE509316
EST:     TTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGC                         AGTCATCTTTGGTATGCTCGTATCGCTTCCTATCACACTGCTCTATTACGT
genomic: TTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGCgtaagtcttt ... tttttatcagAGTCATCTTTGGTATGCTCGTATCGCTTCCTATCACACTGCTCTATTACGT