1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCACGGACAGTATGTACGAATTCACGGACACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcactcgattctctgctcttggaactccatagctaacttcgttttgcag
species | Selaginella moellendorffii |
transcript | EFJ17203 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAA GCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTTEST: gi|169111399|gb|FE511429.1|FE511429
genomic: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcac ... cgttttgcagGCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTT
EST: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAA GCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTTEST: gi|169111400|gb|FE511430.1|FE511430
genomic: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcac ... cgttttgcagGCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTT
EST: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAA GCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTTEST: gi|169099090|gb|FE502825.1|FE502825
genomic: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcac ... cgttttgcagGCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTT
EST: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAG---- -CCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTT
genomic: CACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcac ... cgttttgcagGCCTATCACAGACTTCAACGAGATCACGTTCCACTTCCTGGACTGCATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGGACAGTATGTACGAATTCACGGACACCTTCGGACGTTCCAGAACAAGAGAACAGTTGTCGCTTTTGCAGTGAAgtaatctcactcgattctctgctcttggaactccatagctaacttcgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA