1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTTGGTATTGGCGGTGGTCCTGGAGGCATGGGTGGCCGTGGGATTTTCAACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAGgtatgtagctacagttactttttttctagcggtttatcaattgtgcctgaaatttgcag
species | Selaginella moellendorffii |
transcript | EFJ17143 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATGCCAAGGACAAG GTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATGEST: gi|169028325|gb|FE432239.1|FE432239
genomic: CAAAAATGCCAAGGACAAGgtatgtagct ... aaatttgcagGTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATG
EST: ACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAG GTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATGEST: gi|169041854|gb|FE449360.1|FE449360
genomic: ACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAGgtatgtagct ... aaatttgcagGTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATG
EST: ACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAG GTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATG
genomic: ACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAGgtatgtagct ... aaatttgcagGTCACTTTCAATGATGTCGCTGGTTGTGACGAAGCCAAGGAAGAGGTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGGTATTGGCGGTGGTCCTGGAGGCATGGGTGGCCGTGGGATTTTCAACGTCGGAAAAGCCCACGTCACTAAGATCAACAAAAATGCCAAGGACAAGgtatgtagctacagttactttttttctagcggtttatcaattgtgcctgaaatttgcag
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