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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCAGCAACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctaggattgaggaacagcgtcgtttctcatgccttcttgttgtttcag

Basic information

species Selaginella moellendorffii
transcript EFJ16329
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169066176|gb|FE475169.1|FE475169
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGNAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: gi|169039372|gb|FE447240.1|FE447240
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: gi|169108315|gb|FE511960.1|FE511960
EST:     TCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCA-TTGTTTCAAGGCG
genomic: TCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: gi|169037417|gb|FE445508.1|FE445508
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCA
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCA
EST: gi|169075797|gb|FE482794.1|FE482794
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: gi|169028252|gb|FE434051.1|FE434051
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGT
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGT
EST: gi|169108015|gb|FE513298.1|FE513298
EST:     GAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: GAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: gi|169108316|gb|FE511961.1|FE511961
EST:     ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG                         GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 19

GCAGCCAGCAACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG




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