1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAAAGGATGGACTGGTTTGGATTTGGCCGGGCTCGGCAACGCCAGAGAGCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctttgtttttccctttgtttgttcttttcaaagcattgctttttgtag
species | Selaginella moellendorffii |
transcript | EFJ15257 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGGAAGTGGAGCATGTTCTTTTGATGGAAA-CTTGCTCEST: gi|169103840|gb|FE508350.1|FE508350
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGNAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTCEST: gi|169103839|gb|FE508349.1|FE508349
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTCEST: gi|169116462|gb|FE517487.1|FE517487
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTCEST: gi|169103797|gb|FE504199.1|FE504199
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTCEST: gi|169116461|gb|FE517486.1|FE517486
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
EST: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAG ATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
genomic: GCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctt ... ctttttgtagATTATTCTTGACTTGGAAGTGGAGCATGGTCTTTTGATGGAAAACTTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAAGGATGGACTGGTTTGGATTTGGCCGGGCTCGGCAACGCCAGAGAGCGACATTCCGAGCTTGCTACCTCCAGATAACTTCACACTGCATGCCGAGgtgattgctttgtttttccctttgtttgttcttttcaaagcattgctttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT