1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGACATGTGGTCTGTCGGGTGCATTTTCGCCGAGATGATCAATCAGCGACCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtcgcatatttttcctcctcctttctcgtacagaccctgttgcctgaccggacgctttggcag
species | Selaginella moellendorffii |
transcript | EFJ15022 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCG TATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCCEST: gi|169107860|gb|FE513767.1|FE513767
genomic: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtc ... gctttggcagTATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCC
EST: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCG TATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCCEST: gi|169019993|gb|FE430850.1|FE430850
genomic: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtc ... gctttggcagTATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCC
EST: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCG TATCCTTGGAACTCCCAACEST: gi|169019992|gb|FE430849.1|FE430849
genomic: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtc ... gctttggcagTATCCTTGGAACTCCCAAC
EST: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCG TATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCC
genomic: CCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtc ... gctttggcagTATCCTTGGAACTCCCAACGAAGAGACATGGCCGGGTGTGACGTCCCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGACATGTGGTCTGTCGGGTGCATTTTCGCCGAGATGATCAATCAGCGACCACTTTTCCCTGGAGACTCCGAGATTGACGAGCTGTTTAAGATTTTTCGgtatggtgtcgcatatttttcctcctcctttctcgtacagaccctgttgcctgaccggacgctttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT