Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaaccag

Basic information

species Selaginella moellendorffii
transcript EFJ14726
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 4
AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcg--gaccttaaaccgtgcatcca-aactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaaccag------------------
||||| ||   ||||||| | ||||| ||||||||  ||||||| || ||||| ||||||||||||||||| |||||| |||  |||||  ||     |||| || | |    |    | ||  |   |    || |   ||   ||  || |  | |  |   |      |  | |    |                  
AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttccttgcatcaaactgcagttgaatttcaatgtcttgttaaagtagatttgactttggttgggttcgacagtttgtctcccaagtgcctgcat

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 5
AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaaccag--------------------------
||||| ||   ||||||| | ||||| ||||||||  ||||||| || ||||| ||||||||||||||||| |||||| |||  |||||  ||     |||| || |  |||| | | |  |||| |    |  ||  ||| |    | ||   ||    |  |||            |                          
AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagct--tccttgcatc--aaactgca-gttgaatttcaatgtcttggtaaagtagacttgactttggttgggttcgacagtttgtctcccaagtgcttgcat

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 5
AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactccta---aaaaaccag-----------------------
|| || ||   ||||||| | ||||| ||||| || |  ||||| ||||| || |||||||||||||||||||||||| |||  |||||  ||      ||| || |  | || | | ||  ||| |    | |   |  | | || | ||   ||    ||  || |||     |   ||                        
AAAAGGGCCTCCAAGATCAGGAAGCTGTTCAATCTTGCAAAGGATGACGACGTGCGCAAGTACGTGAACACGTACCGCAGGACATTCACTACCAAGAATGgtgagct--ttcttgtatct--aactgcat-tgctgtcgtatttgttttgttgagttcattgtgcttctagctgcagttcaatatctcaatgtcttgaaagtaga

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: EDP01810 (Chlamydomonas reinhardtii), 5'ss of exon 3
-----------------------------------------AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaaccag
                                         ||| | || ||||||||||||||| | |||||||| | ||||| |||||| || |||||||  |||     |||      | ||||   ||  |          | |      ||           | |  |   |   |      || |  | | |                      
CCGGCCTGACTGACGAGGAGAAGCCCCGCATCCGCGGCCCCAAGCGCGCGAGCAAGATCCGCAAGATGTTCAACCTGGGCAAGGTGGACGACGTGCGCAAgtgagtgcctgggtattatatgcattttggggggcgggaactaggggttgcttgcgagtggcgggtggcggctgggagggcgaggaagtggatttgggag--------------------

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcctcctcggaccttaaaccgtgcatccaaactcacta-gtgtcgtgtcgtgtcgtgaactcctaaaaaaccag---------------------------------------------------
|||||||||| ||| ||||| ||||||||||| |||  |||||||||||||||  | || ||||| ||||| || ||||| |  ||   | |  || | |||| | || |    |   ||||||  | |  |   |  | | |  || |    || |   ||   ||  |  | | ||||                                                   
AAGAGAGCTACCAAAATCCGAAAGCTCTTCAATCTCACCAAGGAGGACGATGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt----gactcttaaaatgagtgttgtattttaatgtgttttccttcattcagttg-ctggtttagagccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034100|gb|FE444251.1|FE444251
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169101825|gb|FE500771.1|FE500771
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169048524|gb|FE454419.1|FE454419
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169067524|gb|FE475773.1|FE475773
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169040200|gb|FE448122.1|FE448122
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCTTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169049454|gb|FE458300.1|FE458300
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169055042|gb|FE462957.1|FE462957
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169073800|gb|FE484021.1|FE484021
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169112742|gb|FE515118.1|FE515118
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169075486|gb|FE482496.1|FE482496
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169054062|gb|FE462297.1|FE462297
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169074735|gb|FE483305.1|FE483305
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169035698|gb|FE446183.1|FE446183
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169101824|gb|FE500770.1|FE500770
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169056221|gb|FE464070.1|FE464070
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169075485|gb|FE482495.1|FE482495
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169039337|gb|FE449090.1|FE449090
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169102758|gb|FE503966.1|FE503966
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169112741|gb|FE515117.1|FE515117
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169076014|gb|FE480996.1|FE480996
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169058309|gb|FE465023.1|FE465023
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169074734|gb|FE483304.1|FE483304
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169063115|gb|FE471637.1|FE471637
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169049702|gb|FE457768.1|FE457768
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169064127|gb|FE472314.1|FE472314
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169061223|gb|FE470349.1|FE470349
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169065536|gb|FE474828.1|FE474828
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169051339|gb|FE457650.1|FE457650
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169048523|gb|FE454418.1|FE454418
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169058310|gb|FE465024.1|FE465024
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169067221|gb|FE474989.1|FE474989
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169054063|gb|FE462298.1|FE462298
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169056220|gb|FE464069.1|FE464069
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169036060|gb|FE446766.1|FE446766
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCTAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169070522|gb|FE479799.1|FE479799
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169039385|gb|FE449112.1|FE449112
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169101289|gb|FE501977.1|FE501977
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169035699|gb|FE446184.1|FE446184
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169040201|gb|FE448123.1|FE448123
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: gi|169039338|gb|FE449091.1|FE449091
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGAT
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGAT
EST: gi|169061224|gb|FE470350.1|FE470350
EST:     TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG                         GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 79

AAGAGAGCTAGCAAGATCCGCAAGCTCTTCAACCTCGACAAGGAGGACGATGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... aaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGACGCTGCAGAGAAAGCGCGACCGCATTGCCGAGAAGAAGAGGCGCGTCCA




<











<


<