Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAAAGAGACTGGGGCGACGCGCGAGGCCGACTTGGACACAATGCTGGCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatatatgctgaaagaaacgatcatacgttagttttctttgtgacatttgtgacag

Basic information

species Selaginella moellendorffii
transcript EFJ13636
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169029784|gb|FE441017.1|FE441017
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169056514|gb|FE464922.1|FE464922
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|70670001|gb|DN838578.1|DN838578
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGGTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGG-TTT
EST: gi|169067792|gb|FE473376.1|FE473376
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169104371|gb|FE503733.1|FE503733
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169087508|gb|FE494625.1|FE494625
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169079757|gb|FE491166.1|FE491166
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169079758|gb|FE491167.1|FE491167
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169060084|gb|FE468694.1|FE468694
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169088324|gb|FE492042.1|FE492042
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169106399|gb|FE507424.1|FE507424
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169101312|gb|FE502507.1|FE502507
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169101313|gb|FE502508.1|FE502508
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTNNCA-CA-GGACCGCATAAGCAAAATGAAGAGAGGTGCGGTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTT--CAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTT
EST: gi|169048961|gb|FE454947.1|FE454947
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG                         GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: gi|169088325|gb|FE492043.1|FE492043
EST:     GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAAC-AG                         GGGATTCTTCA-CA-GGACCGCATAAGCAAA-TGAAGAGAG
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 60

AGGAGAAAGAGACTGGGGCGACGCGCGAGGCCGACTTGGACACAATGCTGGCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTAGTGAACAATGCGAGAGGAGCCCTCATGGATGCCAATGCGGTGGCGGAA




<











<


<