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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTACCGCTTCTTTTTAAACAAAGAGTATGGGAGCCTGTTTTCATCGCTGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagttttatgcctcccagttttcactgcctctaaactttgtaaaaaccacacag

Basic information

species Selaginella moellendorffii
transcript EFJ13527
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169053892|gb|FE460983.1|FE460983
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169056051|gb|FE465603.1|FE465603
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169053891|gb|FE460982.1|FE460982
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169036019|gb|FE446725.1|FE446725
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169029062|gb|FE437565.1|FE437565
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169110151|gb|FE513366.1|FE513366
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169063898|gb|FE471253.1|FE471253
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169060302|gb|FE467872.1|FE467872
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169056262|gb|FE464397.1|FE464397
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169022853|gb|FE430257.1|FE430257
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACATCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169101856|gb|FE504936.1|FE504936
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169067932|gb|FE473451.1|FE473451
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
EST: gi|169067931|gb|FE473450.1|FE473450
EST:     TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAG                         GTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA
genomic: TGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 17 (upstream exon), 24 (downstream exon)
Score: 2

CTGGTACCGCTTCTTTTTAAACAAAGAGTATGGGAGCCTGTTTTCATCGCTGACAACAGGATTATACCTCACCTTCAAAGTCACCTCGGTCCTTGAGAAGgcaagtttta ... aaccacacagGTGCAAAAGTTCGCTACGGCAGTGAGATCGATTCTTCGCAGGGAAGTCCAATACGGTACATATGCAACGCATGAAGAG




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