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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGAGGTACTTACATGAAGAGTGCCGAGTGGGATGTATTGTTCATCGTGACGTGCGACCAAACAACATTCTGTTAACCCACGACTTCGAGCCAATGgtaagttcttgtctcagtttctattcgataggatagtccgactcacttgtctgagcatcag

Basic information

species Selaginella moellendorffii
transcript EFJ12405
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12405 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA15G02680.1 (Glycine max), 5'ss of exon 5
AGCTTTGAGGTACTTACATGAAGAGTGCCGAGTGGGATGTATTGTTCATCGTGACGTGCGACCAAACAACATTCTGTTAACCCACGACTTCGAGCCAATGgtaagttcttgtctcagtttctattcgataggatagtc--cgactcacttgtctgagcatcag-------------------------------------------------------------------
||  ||  | ||  | |||||||||||| ||||||| || ||| | ||||||||| |||| ||||||||||||||  | || || || || || ||| ||||| | |  ||| |    | || |    |  |  || |  |   |   | || |    || |                                                                    
AGGGTTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCATCGTGACATGCGGCCAAACAACATTCTTATCACTCATGATTTTGAACCACTGgtacggttgtgttttgcctgctttgtactttg-cagccagcagttttatagtttatatatgaaaggcaccagcacttatctttgtttcaaaaagttttcacttcattaaataattgttaaattcttcaag

upper sequence: EFJ12405 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA13G42760.2 (Glycine max), 5'ss of exon 8
AGCTTTGAGGTACTTACATGAAGAGTGCCGAGTGGGATGTATTGTTCATCGTGACGTGCGACCAAACAACATTCTGTTAACCCACGACTTCGAGCCAATGgtaagttcttgtctcagtttctattcgataggatagtccga--ctcacttgtctgagcatcag----------------------------------------------------------------------
||  ||| | ||  | |||||||||||| ||||||| || ||| | ||||||||| |||| || |||||||||||  | || || || || || ||| ||||| | |  ||| |    | || |  | |     || | |    |   | || |    || |                                                                       
AGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCATCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCACTGgtagggttgtgttttgcctgctttgtgcttttgcagccaggagttttatagtttatatatgaaaggcgccactacttatcttttttgcccaaaagttttcacttcattaaataattgtgttaaattcttcaag