1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCCGCTTCACTTACAAGCCAAACAAATTCAGAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctcacgttttctagcctcagatacgagcatgaaattatgtttctacatttcag
species | Selaginella moellendorffii |
transcript | EFJ10977 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTTTGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAG GTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTCEST: gi|169019848|gb|FE426935.1|FE426935
genomic: GAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctc ... tacatttcagGTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTC
EST: GAGCTTTTGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAG GTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTCEST: gi|169019847|gb|FE426934.1|FE426934
genomic: GAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctc ... tacatttcagGTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTC
EST: GAGCTTTTGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAG GTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTCEST: gi|169106161|gb|FE507953.1|FE507953
genomic: GAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctc ... tacatttcagGTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTC
EST: GAGCTTTTGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAG GTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTC
genomic: GAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctc ... tacatttcagGTGACTCGGGCCATTTTGGAGAACCCGGCTGACAAAACAAAGATCTTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGCTTCACTTACAAGCCAAACAAATTCAGAGCTTTCGGTATGCTTGCTGGTGGTTCCGGCCTGACTCCAATGTACCAGgcaagccctcacgttttctagcctcagatacgagcatgaaattatgtttctacatttcag
- - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG