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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGGAACGTTATCAGgtatgtagttccactaggaaataaaatactcatggatggtcttttcacag

Basic information

species Selaginella moellendorffii
transcript EFJ10118
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10118 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S158_177V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGGAACGTTATCAGgtatgtagttccactaggaaataaaatactcatggatggtct--tttcacag------------------------------------------------------------------------------------------------------------------------------------
| || || ||  | |  ||  | || || || || |||||||| ||||||||||| || || |||||||| || ||| | |||||||| ||||| || |||||| ||  ||    ||     |  ||  |||  |||  |||   |||| |                                                                                                                                     
CAGGATCCGAAAGGGTGAAGCGTACGGGTGCTGTGGGCATGCGGTTCAAAGAATCTGTCACCATCAACTGTGGTCTTCTTGCTCTTGGCAACGTCATAAGgtat-ta--tctgtcagatgccactat-ttcactgattctctcgcttcatatgccttcgatggccttgaagcagcatgtgatgggttctttgaaaattttccattcgatcctttttgttgcatgagcaaatcgatgcacttgttttcaggagataccatctgagcttcttgtttgcaagtgtag

upper sequence: EFJ10118 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S47_261V6.1 (Physcomitrella patens), 5'ss of exon 6
CTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGGAACGTTATCAGgtatgtagttccactaggaaataaaatactcatggatggtcttttcacag--------------------------------------------------------------------------------------------------------------------------------------------------------
| || |||||  | || ||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | || || || || |||||  || ||    || |   | |     |||| ||||  |||  ||  |                                                                                                                                                        
CAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCAATGTCATAAGgta-atatttg---taagctgtcattatttcattgatgtccttaccagtgttgcaattctttcacttcatttggcaccgatggcttgtatcagtatgtgatggatcctctgcaaatcttgtgttcataaattatttttgtatcagcaaaccaatttacttatttctaggaagtttgatattggcttactgtaacatgtgtag