1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATATGGATCAATTGGATGGTCAGTTGGAGCTACCTTGGGCTACGCTCAAGCGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcacaactctttagtagtctcaaggtttttacgcacgagagatcgcgaatccag
species | Selaginella moellendorffii |
transcript | EFJ09318 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169072664|gb|FE481304.1|FE481304
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169095246|gb|FE496689.1|FE496689
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169023540|gb|FE430528.1|FE430528
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169077353|gb|FE485655.1|FE485655
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169095287|gb|FE499382.1|FE499382
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATTTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169082618|gb|FE489089.1|FE489089
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169095247|gb|FE496690.1|FE496690
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169020403|gb|FE431650.1|FE431650
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169077080|gb|FE484459.1|FE484459
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169067616|gb|FE475306.1|FE475306
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATCEST: gi|169057244|gb|FE464196.1|FE464196
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
EST: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAG GTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
genomic: CGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcac ... gcgaatccagGTGACTGCTCAGGATGTGTCTACCATGATCCGATATGGCCAGAAGAACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGGATCAATTGGATGGTCAGTTGGAGCTACCTTGGGCTACGCTCAAGCGGCCAAAGACAAGCGTGTCATCTCATGCATTGGAGACGGAAGTTTTCAGgtatcatcacaactctttagtagtctcaaggtttttacgcacgagagatcgcgaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA