1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATCCACCATATCCCTGGGCCAGAAGGTGTTCGTGGTAGAAATTCGGACAACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaacgagttttttttttcctctctctcctgttttgcagaagcaaactaacgtgagattgtgtggtgtgtag
species | Selaginella moellendorffii |
transcript | EFJ09286 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAGGGAGGAGCTAGACAAGGAGEST: gi|169113664|gb|FE515290.1|FE515290
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGCAGCTAGACGAGGAGEST: gi|169046274|gb|FE456407.1|FE456407
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAGEST: gi|169081288|gb|FE489278.1|FE489278
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAGEST: gi|169100903|gb|FE502233.1|FE502233
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGCAGCTAGACGAGGAGEST: gi|169078884|gb|FE489656.1|FE489656
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGCAGCTAGACGAGGAGEST: gi|169066576|gb|FE474136.1|FE474136
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAGEST: gi|169115072|gb|FE516645.1|FE516645
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAGEST: gi|169102736|gb|FE508091.1|FE508091
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAGEST: gi|169045727|gb|FE451700.1|FE451700
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGCAGCTAGACGAGGAGEST: gi|169045726|gb|FE451699.1|FE451699
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
EST: ACAATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAG GATGGACTCCGGATCACTTATATGTGGATCAAGGAGCAGCTAGACGAGGAG
genomic: ACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaac ... tggtgtgtagGATGGACTCCGGATCACTTATATGTGGATCAAGGAGGAGCTAGACAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCACCATATCCCTGGGCCAGAAGGTGTTCGTGGTAGAAATTCGGACAACGATCTGATAAAGGAGAAGCTCGGTTGGGCCCCAACAATGCGACTCAAGgtgaaaaaacgagttttttttttcctctctctcctgttttgcagaagcaaactaacgtgagattgtgtggtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC