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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAAAGAGCTCGATGCTCTAACCAAGCGGACACAAGACGGTGGCACGGAGGTTGTCAAGGCGAAAGCCGGAAAAGGCTCTGCGACGTTATCCATGGCgtaagctctcttttttgtcaggaactccattgttaacaacacactctcgttcttcaactttatccag

Basic information

species Selaginella moellendorffii
transcript EFJ08326
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08326 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S122_52V6.1 (Physcomitrella patens), 5'ss of exon 5
CAACAAAAGAGCTCGATGCTCTAACCAAGCGGACACAAGACGGTGGCACGGAGGTTGTCAAGGCGAAAGCCGGAAAAGGCTCTGCGACGTTATCCATGGCgtaagctctcttt--tttgtcagg----aactccattgttaacaacacactctcgtt---cttcaactttatccag------------------------
||  ||| ||  | |||||||||||||||||||  ||||| || || || || || ||  | || ||||| |||||||||||||| || ||||| |||||||||||         || |  |      |||| |||   |   || | | ||||| |   ||  ||    ||  |                         
CAGAAAAGGACATTGATGCTCTAACCAAGCGGATTCAAGATGGCGGAACAGAAGTAGTGCAAGCCAAAGCTGGAAAAGGCTCTGCCACTTTATCAATGGCgtaagcaaagcaaaattcgaaaaatctaaacttcatctcttcaaataaattctcgatgaactcaaagaaaattaaaacttgatcacttcaaacaaaatta

upper sequence: EFJ08326 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S91_247V6.1 (Physcomitrella patens), 5'ss of exon 5
-CAACAAAAGAGCTCGATGCTCTAACCAAGCGGACACAAGACGGTGGCACGGAGGTTGTCAAGGCGAAAGCCGGAAAAGGCTCTGCGACGTTATCCATGGCgtaagctctcttttttgtcaggaact-ccattgttaacaacacactctcgttcttcaactttatccag---------------------------------------------------------------------------------------------
   || |  || ||||| ||||| |||||||| || ||||| ||||| |||||||| ||| | || || ||||| || ||||| || || ||||| ||||||||||||   ||||   ||| | ||  ||| | ||    |      |      |   |||| |   |                                                                                              
GTGACGAG-GAACTCGACGCTCTTACCAAGCGTACTCAAGATGGTGGAACGGAGGTCGTCCAAGCTAAGGCCGGCAAGGGCTCCGCAACTTTATCTATGGCgtaagcttcattttacttcaagtacagccagtcttttacatgtgtgcggagcgtatgacttgaagtaccgggctgagctacttgatgcacactataataagcgcagcacgatatgatttgtgaatgtcattctgatttattgtggaaacgttgttttgcag