1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttctctcctccacttctcgtaactccgttttaaaaactttggaaagagaacag
species | Selaginella moellendorffii |
transcript | EFJ07601 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169066303|gb|FE472979.1|FE472979
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169067004|gb|FE475981.1|FE475981
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169044683|gb|FE452477.1|FE452477
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169058558|gb|FE464284.1|FE464284
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169094622|gb|FE494548.1|FE494548
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169094623|gb|FE494549.1|FE494549
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169067005|gb|FE475982.1|FE475982
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169044684|gb|FE452478.1|FE452478
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGGEST: gi|169058559|gb|FE464285.1|FE464285
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
EST: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAG GTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
genomic: GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttct ... aagagaacagGTTTTCGATACCAAGTTTGCTAGAATTGGTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATCAAGAAAAGTTTTATTTCAACCCCGGAGACACAGGCTTCAAGgtctgtttctctcctccacttctcgtaactccgttttaaaaactttggaaagagaacag
- - - AAGAAA