1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATTCAATTCCGAGAAGGCATAGTCTTCCAGATGTTTCAGAGGTAATAGGGAAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttcggctcttaaatatttgctacatatctttcatgcctttgttaaagcag
species | Selaginella moellendorffii |
transcript | EFJ07343 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGNNNNNNNAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169024988|gb|FE434640.1|FE434640
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGNNNNNNNAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169039426|gb|FE447268.1|FE447268
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGNNNNNNNAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169115294|gb|FE517010.1|FE517010
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGNNNNNNNAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169052748|gb|FE461165.1|FE461165
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGNNNNNNNAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAATTCCGAGAAGGCATAGTCTTCCAGATGTTTCAGAGGTAATAGGGAAAACTGGTAAATCGAAGAGACGATCATCAGGTTTTTTTAATCTCTTGAGgtacgttttcggctcttaaatatttgctacatatctttcatgcctttgttaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA