1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGGATCGGTTTAAGGGAAAACATGTTTATACACCAGTTACCAGAGAGGGATACTGGCAGTTCAACATGGGAGATGTGGTTGTGGATGGCCAGAGCACAGgttatatcataatggcttgctatatgcactagttcttaatggtttcatgtttgcagggttctgtgctaaaggatgtgctgcaattgcagattctggaact...
species | Selaginella moellendorffii |
transcript | EFJ06917 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGTGGCTGTGGATGGCCAGAGCACAG GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCEST: gi|169048944|gb|FE456061.1|FE456061
genomic: ATGTGGTTGTGGATGGCCAGAGCACAGgttatatcat ... atgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGC
EST: ATACTGGCAGTTCAACATGGGAGATGTGGCTGTGGATGGCCAGAGCACAG GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCEST: gi|169112989|gb|FE515469.1|FE515469
genomic: ATACTGGCAGTTCAACATGGGAGATGTGGTTGTGGATGGCCAGAGCACAGgttatatcat ... atgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGC
EST: ATACTGGCAGTTCAACATGGGAGATGTGGCTGTGGATGGCCAGAGCACAG GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCEST: gi|169080225|gb|FE488904.1|FE488904
genomic: ATACTGGCAGTTCAACATGGGAGATGTGGTTGTGGATGGCCAGAGCACAGgttatatcat ... atgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGC
EST: ATACTGGCAGTTCAACATGGGAGATGTGGCTGTGGATGGCCAGAGCACAG GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGC
genomic: ATACTGGCAGTTCAACATGGGAGATGTGGTTGTGGATGGCCAGAGCACAGgttatatcat ... atgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGATCGGTTTAAGGGAAAACATGTTTATACACCAGTTACCAGAGAGGGATACTGGCAGTTCAACATGGGAGATGTGGTTGTGGATGGCCAGAGCACAGgttatatcataatggcttgctatatgcactagttcttaatggtttcatgtttgcagggttctgtgctaaaggatgtgctgcaattgcagattctggaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggat