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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGATGAATGCGAGCGGAAGTATGGAAATCCAAACGCTTGGCGTTACTGCACTGACGTTTTCGATTATCTAACTATCTCTGCGATCATCGACGGCAGAgtaagtcttatcaaaaattcttttttcctttgtcgtgcatgacgttgtactctcag

Basic information

species Selaginella moellendorffii
transcript EFJ05314
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05314 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S207_36V6.1 (Physcomitrella patens), 5'ss of exon 5
CTATGATGAATGCGAGCGGAAGTATGGAAATCCAAACGCTTGGCGTTACTGCACTGACGTTTTCGATTATCTAACTATCTCTGCGATCATCGACGGCAGAgtaagt------ctta-----tcaaaaattcttttttcctttgtcgtgcatgacgttgtactctcag---------------------------------
 ||||| |||||| |||||||||||||||| ||||| |||||||| ||||||||||| ||||| || || || ||  |||| || || || || || || |||||       ||||     | ||| |||  || |   | |||    | | | ||| |      ||                                 
TTATGACGAATGCCAGCGGAAGTATGGAAACCCAAATGCTTGGCGGTACTGCACTGATGTTTTTGACTACCTTACACTCTCAGCCATAATAGATGGAAGGgtaagggggaaacttacgtggttaaatattgcttgtatgtctgtttaactttatgttttgagaagagtctatcagtagatgtcatcatggttgaggatta

upper sequence: EFJ05314 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S31_220V6.1 (Physcomitrella patens), 5'ss of exon 5
CTATGATGAATGCGAGCGGAAGTATGGAAATCCAAACGCTTGGCGTTACTGCACTGACGTTTTCGATTATCTAACTATCTCTGCGATCATCGACGGCAGAgtaagtctta---tcaaaaattcttttttcctttgtcgtgcatg---acgttgtactctcag---------------------------------------
 |||||||||||  |||| ||||||||||| ||||| |||||||| || |||||||||||||| || || || ||  |||| || ||||| || || || ||||   | |   |   |   |    ||   |  || ||| |||   |      | | ||                                         
TTATGATGAATGTCAGCGTAAGTATGGAAACCCAAATGCTTGGCGGTATTGCACTGACGTTTTTGACTACCTGACACTCTCGGCTATCATAGATGGAAGGgtaaagttcaaacttgcacggttaaattctgtccgt-gtgtatgttcaacccagattttcgataaagagcctcttggtagatctcatcgtgctgtaggatt