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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACTCCAACTGGTCCAACTGGCCAAACACATTGGGTTGATTCATCGTCAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagagtgcgattgcacgaggagagtgcacgacatcctacgtaaatttctctagctctgtgcataatagaacttacatcagcgaagcccgttctctttccagtttcatccgctgatcggtactttcgtttttgtttgcacag

Basic information

species Selaginella moellendorffii
transcript EFJ11209
intron # 46
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169093813|gb|FE494755.1|FE494755
EST:     CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         -A-G--TTAGCAGCGGTTTTTAAAAAGATTGGAGACAAGCAAACGTGCACG
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACG
EST: gi|169100104|gb|FE501863.1|FE501863
EST:     CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         CAAGAGTTAGCAGCGGTTTTAAA-AAGATTGG
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGG
EST: gi|169022630|gb|FE428357.1|FE428357
EST:     CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         CAAGAGTTAGCAGCGGTTTTTAAAAAGATTGGAGACAAGCAAACGTGCACG
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACG
EST: gi|169077690|gb|FE484952.1|FE484952
EST:     CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         CAAGAGTTAGCAGCGGTTTTTAAAAAGATTGGAGACAAGCAAACGTGCACG
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACG
EST: gi|169081005|gb|FE486122.1|FE486122
EST:     CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         CAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACG
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACG
EST: gi|169062797|gb|FE472846.1|FE472846
EST:     CAAATGNGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAA                         CAAGAGTTAGCAGCGGTTTTTAAGAAAGAT-GGAGACAAGCAAACGTGCA
genomic: CAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAA-GATTGGAGACAAGCAAACGTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 34 (downstream exon)
Score: 15

GCTCACTCCAACTGGTCCAACTGGCCAAACACATTGGGTTGATTCATCGTCAAATGGGCCGGCTTCTCCTGCTGGTCATACGGCTGAGGCACAATTGAAAgtaagcagag ... gtttgcacagCAAGAGTTAGCAGCGGTTTTTAAGAAGATTGGAGACAAGCAAACGTGCACGATTGGGTTGTACGAGTTGTATCGTATAACTCAGTTATATCCTCAG




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