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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGGCTTGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagcttgtttcttgatgatgatgtgatttttccttgatgatgatgatataattttttttgtttctcag

Basic information

species Selaginella moellendorffii
transcript EFJ36429
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCATGGCTTGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagcttgtttcttgatgatgat-gtgatttttccttgatgatga-tgatataattttttttgtttctcag----------------
|| ||||||||||||||||| |||||||||||||| || || || ||||| ||| | || |||||||| ||  |||||||        |  |  || ||    || ||   ||| | |||| || | |||     |   | | | |                 
ACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaag--------taaagaataatcacaatcttgttttgctaatgactggtttaaccacctgaatgtttaatgatgtttatgaaccag