1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAACTTTATCACGAGTTGCATGCTCTAGACAGGTTTCATAATGATCTCAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgccattcttttgtgttaaaaagaagctccattcaagcccgtgtgtttcttatcag
species | Selaginella moellendorffii |
transcript | EFJ35129 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAG GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACGEST: gi|169044747|gb|FE451904.1|FE451904
genomic: CAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgcc ... ttcttatcagGAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACG
EST: CAAGCGCAAGCTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAG GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACGEST: gi|169043771|gb|FE453788.1|FE453788
genomic: CAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgcc ... ttcttatcagGAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACG
EST: CAAGCGCAAGCTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAG GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACGEST: gi|169024122|gb|FE435178.1|FE435178
genomic: CAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgcc ... ttcttatcagGAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACG
EST: CAAGCGCAAGCTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAG GAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACG
genomic: CAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgcc ... ttcttatcagGAGAGAGCATTGCCATGCTCAAAGGCGATTTAAAAGCCCAGCAGAAACACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTTATCACGAGTTGCATGCTCTAGACAGGTTTCATAATGATCTCAAGCGCAAACTGCAGCAAGAGGAAGAGATGTACAGCAATTCTCAAAGAGgtaccacgccattcttttgtgttaaaaagaagctccattcaagcccgtgtgtttcttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG